Click on the OK button and the executable path is displayed in the ImageJ/Fiji application field. If you are a PC user, select the Browse button, specify the Fiji folder, and select the. In the ImageJ/Fiji application field, the executable path must be entered. To specify the folder with the Fiji.exe file under the Fiji menu choose Options. However, all plug-ins are deactivated, until the Fiji folder is not specified. Now, in the Imaris Fiji menu, you can find a list of plug-ins. Fiji can be downloaded from the Bitplane Customer Portal.ĭepending upon your operating system, select the appropriate link and follow the specific download instructions. If you do not have Fiji, first you have to install it. The Imaris Fiji menu allows you to use your favorite Fiji plug-ins and yet continue with your work within Imaris. ![]() ImageJ/Fiji plugins within Imaris, enhance and extend Imaris functionalities by facilitating additional image processing and offering a solution for specific problems. The second part, for Mac users, shows which steps to follow in order to connect MATLAB (or MATLAB compiler runtime) to Imaris and thus activate the available Imaris XTensions. In the first part of this “How to” section, both PC and Macintosh users can find the instructions on how to activate ImageJ/Fiji plugins within Imaris. Please note that the instructions in this tutorial are valid up to Imaris 7.6.5
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